This should do the trick:
from org.jfree.chart import ChartMouseListener
class CustomChartMouseListener(ChartMouseListener):
def chartMouseClicked(self,e):
xyItem = e.getEntity() #gets the data entity that was clicked, None if no entity was clicked
if xyItem: #ensure that a data entity was clicked
dataset = xyItem.getDataset()
xValue = dataset.getXValue(xyItem.getSeriesIndex(),xyItem.getItem())
yValue = dataset.getYValue(xyItem.getSeriesIndex(),xyItem.getItem())
system.nav.openWindow('YourPopupWindowClass',{'yValueParameterName':xValue,'yValueParameterName':yValue})
for listener in self.getListeners(ChartMouseListener):
self.removeChartMouseListener(listener)
self.addChartMouseListener(CustomChartMouseListener())