@chasondeshotel I am about where you are. Git is miserable in Program Files in Windows. Only semi-stable thing I have going is I run all my git commands as an Admin user, but agree its not pleasant.
Right now, we have Git invoking through the Project Update script, but we are soon looking to change that approach to a Git repo per project and have a Perspective UI that triggers sendMessage commands to the GW to execute git commits for projects when developers want to commit their project.